论文标题

一种用于细胞泄漏计算建模的表面有限元方法

A surface finite element method for computational modelling of cell blebbing

论文作者

Stinner, Björn, Dedner, Andreas, Nixon, Adam

论文摘要

细胞爆炸是细胞膜的突起,可以对细胞迁移有用。我们为在力平衡方面的机械和几何方面得出了一个连续模型。它是抽象和灵活的,因为它允许修改与膜张力或膜和细胞皮质之间的接头分子有关的力贡献。变形膜和所有力通过固定参考表面上的参数化表示。提出并分析了差异公式。为此,我们基于表面有限元方法得出一个半污垢方案。我们提供了由于空间离散化而导致的误差的收敛结果和估计。此外,我们提出了一个计算框架,使用Python中实现的域特定语言,可以在此方便地进行特定模型。虽然可以在Python脚本环境中完成高级程序控制,但是随着时间的推移,将解决方案演变为实际的计算昂贵步骤是通过与有效的软件后端结合来实现的。可以考虑根据参数化或从图像数据获得的细胞膜几何形状。几个数值模拟结果说明了该方法。

Cell blebs are protrusions of the cell membrane and can be instrumental for cell migration. We derive a continuum model for the mechanical and geometrical aspects of the onset of blebbing in terms of a force balance. It is abstract and flexible in that it allows for amending force contributions related to membrane tension or the presence of linker molecules between membrane and cell cortex. The deforming membrane and all forces are expressed by means of a parametrisation over a stationary reference surface. A variational formulation is presented and analysed for well-posedness. For this purpose, we derive a semi-discrete scheme based on the surface finite element method. We provide a convergence result and estimates of the error due to the spatial discretisation. Furthermore, we present a computational framework where specific models can be implemented and later on conveniently amended if desired, using a domain specific language implemented in Python. While the high level program control can be done within the Python scripting environment, the actual computationally expensive step of evolving the solution over time is carried out by binding to an efficient software backend. Cell membrane geometries given in terms of a parametrisation or obtained from image data can be accounted for. A couple of numerical simulation results illustrate the approach.

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