论文标题
瞬变会产生内存并破坏随机酶网络中的双曲线
Transients generate memory and break hyperbolicity in stochastic enzymatic networks
论文作者
论文摘要
催化速率对底物浓度的双曲依赖性是酶动力学的经典结果,由著名的Michaelis-Menten方程量化。通过确定性反应网络的图理论分析,这种关系在各种化学和生物学环境中的无处不在。然而,实验表明,“分子噪声” - 分子尺度上的内在随机性 - 导致与经典结果和意外效应(例如“分子记忆”,即失误事件之间的统计独立性崩溃)的显着偏差。在这里,我们通过一种新的分析方法表明,在多种酶的随机反应网络中,记忆和非透明度具有共同的来源。单个酶网络不接受此类瞬变。瞬态的瞬态屈服逐渐恢复了记忆消失和双曲线的稳态。我们提出了根据周转时间定义的新统计措施,以区分瞬态和稳态,并将其应用于具有里程碑意义的实验,该实验是在具有多个结合位点的单个酶中首次观察到的分子记忆。我们的研究表明,多种酶在分子水平上的催化始终包含一个非古典制度,并提供了有关如何达到经典极限的洞察力。
The hyperbolic dependence of catalytic rate on substrate concentration is a classical result in enzyme kinetics, quantified by the celebrated Michaelis-Menten equation. The ubiquity of this relation in diverse chemical and biological contexts has recently been rationalized by a graph-theoretic analysis of deterministic reaction networks. Experiments, however, have revealed that "molecular noise" - intrinsic stochasticity at the molecular scale - leads to significant deviations from classical results and to unexpected effects like "molecular memory", i.e., the breakdown of statistical independence between turnover events. Here we show, through a new method of analysis, that memory and non-hyperbolicity have a common source in an initial, and observably long, transient peculiar to stochastic reaction networks of multiple enzymes. Networks of single enzymes do not admit such transients. The transient yields, asymptotically, to a steady-state in which memory vanishes and hyperbolicity is recovered. We propose new statistical measures, defined in terms of turnover times, to distinguish between the transient and steady states and apply these to experimental data from a landmark experiment that first observed molecular memory in a single enzyme with multiple binding sites. Our study shows that catalysis at the molecular level with more than one enzyme always contains a non-classical regime and provides insight on how the classical limit is attained.