论文标题

混乱的杂斜网络作为生物系统转换行为的模型

Chaotic heteroclinic networks as models of switching behavior in biological systems

论文作者

Morrison, Megan, Young, Lai-Sang

论文摘要

生物活性的关键特征通常可以通过有限数量的半稳定状态之间的过渡来捕获,这些半稳定状态与行为或决策相对应。我们在这里提出了一类广泛的动态系统,非常适合对这种活动进行建模。我们提出的模型是混乱的杂斜网络,具有稳定和不稳定流形的非平凡交集。由于对初始条件的敏感依赖性,状态之间的过渡似乎是随机的。可以通过几何设计将停留时间,退出分布和其他过渡统计数据内置在模型中,并且可以通过可调参数来控制。为了测试我们模型模拟现实生物学现象的能力,我们转向了研究最多的生物之一,即{\ it C. elegans},以其有限的行为状态而闻名。我们从两个实验室重建了实验数据,证明了该模型在各种条件下定量再现停留时间和过渡统计的能力。复杂动力学系统中的主要状态之间的随机切换已经进行了广泛的研究,并且通常被建模为马尔可夫链。作为替代方案,我们在这里提出了一个新的范式,即确定性规则生成的混乱杂斜网络(无需噪声)。混乱的杂斜网络可用于建模具有任意体系结构和大小的系统,而相位尺寸不相称。它们具有很高的灵活性,并且能够捕获可以通过控制参数调整的广泛过渡特征。

Key features of biological activity can often be captured by transitions between a finite number of semi-stable states that correspond to behaviors or decisions. We present here a broad class of dynamical systems that are ideal for modeling such activity. The models we propose are chaotic heteroclinic networks with nontrivial intersections of stable and unstable manifolds. Due to the sensitive dependence on initial conditions, transitions between states are seemingly random. Dwell times, exit distributions, and other transition statistics can be built into the model through geometric design and can be controlled by tunable parameters. To test our model's ability to simulate realistic biological phenomena, we turned to one of the most studied organisms, {\it C. elegans}, well known for its limited behavioral states. We reconstructed experimental data from two laboratories, demonstrating the model's ability to quantitatively reproduce dwell times and transition statistics under a variety of conditions. Stochastic switching between dominant states in complex dynamical systems has been extensively studied and is often modeled as Markov chains. As an alternative, we propose here a new paradigm, namely chaotic heteroclinic networks generated by deterministic rules (without the necessity for noise). Chaotic heteroclinic networks can be used to model systems with arbitrary architecture and size without a commensurate increase in phase dimension. They are highly flexible and able to capture a wide range of transition characteristics that can be adjusted through control parameters.

扫码加入交流群

加入微信交流群

微信交流群二维码

扫码加入学术交流群,获取更多资源