论文标题

由于基因表达动力学中的宿主电路相互作用而引起的时空模式形成

Spatio-temporal Pattern Formation due to Host-Circuit Interplay in Gene Expression Dynamics

论文作者

Chakraborty, Priya, Roy, Ushasi, Jolly, Mohit K., Ghosh, Sayantari

论文摘要

生物系统主要取决于它们的生物性能,以表现出细胞形态和生理学方面的非性异质性。由于潜在的双重性而产生的表型异质细胞的空间模式可能在诸如生物膜发展,适应性,细胞运动性等现象中起着重要作用。尽管非线性阳性反馈调节(如合作异二聚体形成),诸如合作性异二聚体形成之类的是惯常的理由,是养生的惯用原因,相似的动态也可能导致宿主互动。在本文中,我们通过具有非合作阳性反馈的基序调查了模式形成,该基序因其表达而对宿主施加了代谢负担。在扩散环境内设置的细胞阵列中,我们分别在各种初始条件的背景下研究了一个维度和二维中的时空扩散。此外,通过连接的组件分析量化了表现出相同稳态的细胞数量以及它们的空间分布。已经研究了相关状态的稳定性和模式的时间演化,扩散系数变化的影响。

Biological systems are majorly dependent on their property of bistability in order to exhibit nongenetic heterogeneity in terms of cellular morphology and physiology. Spatial patterns of phenotypically heterogeneous cells, arising due to underlying bistability, may play significant role in phenomena like biofilm development, adaptation, cell motility etc. While nonlinear positive feedback regulation, like cooperative heterodimer formation are the usual reason behind bistability, similar dynamics can also occur as a consequence of host-circuit interaction. In this paper, we have investigated the pattern formation by a motif with non-cooperative positive feedback, that imposes a metabolic burden on its host due to its expression. In a cellular array set inside diffusible environment, we investigate spatio-temporal diffusion in one dimension as well as in two dimension in the context of various initial conditions respectively. Moreover, the number of cells exhibiting the same steady state, as well as their spatial distribution has been quantified in terms of connected component analysis. The effect of diffusion coefficient variation has been studied in terms of stability of related states and time evolution of patterns.

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