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Deep generative models have become useful for synthetic data generation, particularly population synthesis. The models implicitly learn the probability distribution of a dataset and can draw samples from a distribution. Several models have been proposed, but their performance is only tested on a single cross-sectional sample. The implementation of population synthesis on single datasets is seen as a drawback that needs further studies to explore the robustness of the models on multiple datasets. While comparing with the real data can increase trust and interpretability of the models, techniques to evaluate deep generative models' robustness for population synthesis remain underexplored. In this study, we present bootstrap confidence interval for the deep generative models, an approach that computes efficient confidence intervals for mean errors predictions to evaluate the robustness of the models to multiple datasets. Specifically, we adopt the tabular-based Composite Travel Generative Adversarial Network (CTGAN) and Variational Autoencoder (VAE), to estimate the distribution of the population, by generating agents that have tabular data using several samples over time from the same study area. The models are implemented on multiple travel diaries of Montreal Origin- Destination Survey of 2008, 2013, and 2018 and compare the predictive performance under varying sample sizes from multiple surveys. Results show that the predictive errors of CTGAN have narrower confidence intervals indicating its robustness to multiple datasets of the varying sample sizes when compared to VAE. Again, the evaluation of model robustness against varying sample size shows a minimal decrease in model performance with decrease in sample size. This study directly supports agent-based modelling by enabling finer synthetic generation of populations in a reliable environment.